Department of Radiology - Medical Physics

Journal Papers / Book Chapter / Thesis / Patents

2018

• Volker Arnd Coenen, Lena Valerie Schumacher, Christoph Kaller, Thomas Eduard Schlaepfer, Peter Christoph Reinacher, Karl Egger, Horst Urbach, Marco Reisert
  The anatomy of the human medial forebrain bundle: Ventral tegmental area connections to reward-associated subcortical and frontal lobe regions,
  NeuroImage: Clinical 18, 770-783

• S Klöppel, S Yang, E Kellner, M Reisert, B Heimbach, H Urbach, J Linn, …
  Voxel-wise deviations from healthy aging for the detection of region-specific atrophy
  NeuroImage: Clinical

• M Reisert, VG Kiselev, B Dhital
  A Unique Analytical Solution of the White Matter Standard Model using Linear and Planar Encodings
  arXiv preprint arXiv:1808.04389

• DS Novikov, M Reisert, VG Kiselev
  Effects of mesoscopic susceptibility and transverse relaxation on diffusion
  NMR Journal of Magnetic Resonance 293, 134-144 2018

• H Skibbe, M Reisert, K Nakae, A Watakabe, J Hata, H Mizukami, H Okano, ...
  PAT-Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3D Micrographs
  IEEE transactions on medical imaging

• M Reisert, VA Coenen, C Kaller, K Egger, H Skibbe
  HAMLET: Hierarchical Harmonic Filters for Learning Tracts from Diffusion MRI
  arXiv preprint arXiv:1807.01068

• L Konopleva, KA Il'yasov, H Skibbe, VG Kiselev, E Kellner, B Dhital, M Reisert
  Modelfree global tractography
  NeuroImage 174, 576-586 1 2018

• LV Schumacher, M Reisert, K Nitschke, K Egger, H Urbach, J Hennig, C. Kaller 
  Data on the test-retest reproducibility of streamline counts as a measure of structural connectivity
  Data in Brief, Elsevier

• E Kellner, I Mader, M Reisert, H Urbach, VG Kiselev
  Arterial input function in a dedicated slice for cerebral perfusion measurements in humans
  Magnetic Resonance Materials in Physics, Biology and Medicine, 1-10

• D Kurzhunov, R Borowiak, M Reisert, AC Özen, M Bock
  Direct estimation of 17O MR images (DIESIS) for quantification of oxygen metabolism in the human brain with partial volume correction
  Magnetic resonance in medicine

• VA Coenen, B Sajonz, M Reisert, J Bostroem, B Bewernick, H Urbach, ...
  Tractography-assisted deep brain stimulation of the superolateral branch of the medial forebrain bundle (slMFB DBS) in major depression
  NeuroImage: Clinical 20, 580-593

• A Horn, N Li, TA Dembek, A Kappel, C Boulay, S Ewert, A Tietze, A Husch, M.Reisert, ...
  Lead-DBS v2: Toward a comprehensive pipeline for deep brain stimulation imaging 
  bioRxiv, 322008

• Schumacher, L. V., Reisert, M., Nitschke, K., Egger, K., Urbach, H., Hennig, J., ... & Kaller, C. P. (2018).
  Probing the reproducibility of quantitative estimates of structural connectivity derived from global tractography.
  NeuroImage 2018.

2017

• Skibbe, Henrik, and Marco Reisert.
  Spherical tensor algebra: A toolkit for 3D image processing. Journal of Mathematical Imaging and Vision 58.3 (2017): 349-381.

• Dhital, Bibek, et al.
  Intra-axonal Diffusivity in Brain White Matter. arXiv preprint arXiv:1712.04565 (2017).

• Kellner, Elias, et al.
  Automated Infarct Core Volumetry Within the Hypoperfused Tissue: Technical Implementation and Evaluation.
  Journal of computer assisted tomography 41.4 (2017): 515-520.

• Umarova, R. M., Beume, L., Reisert, M., Kaller, C. P., Klöppel, S., Mader, I., … & Weiller, C. (2017).
  Distinct white matter alterations following severe stroke Longitudinal DTI study in neglect.
  Neurology, 88(16), 1546-1555.

• Borowiak, R., Reichardt, W., Kurzhunov, D., Schuch, C., Leupold, J., Krafft, A. J., … & Bock, M. (2017).
  Initial investigation of glucose metabolism in mouse brain using enriched 17O‐glucose and dynamic 17O‐MRS.
  NMR in Biomedicine, 30(8).

• Dhital, B., Kellner, E., Kiselev, V. G., & Reisert, M. (2017).
  The absence of restricted water pool in brain white matter.
  NeuroImage 2017

• Kurzhunov, Dmitry, et al.
  3D CMRO2 mapping in human brain with direct 17O MRI: Comparison of conventional and proton-constrained reconstructions.
  Neuroimage 155 (2017): 612-624.

• Kellner, E., Mader, I., Reisert, M., Urbach, H., & Kiselev, V. G. (2017).
  Arterial input function in a dedited slice for cerebral perfusion measurements in humans.
  Magnetic Resonance Materials in Physics, Biology and Medicine, 1-10.

2016

• N. Hübner, A. Mechling, H. Lee, M. Reisert, T. Bienert, J. Hennig, D. von Elverfeldt, L-A Harsan
  The connectomics of brain demyelination: Functional and structural patterns in the cuprizone mouse model 
  NeuroImage Volume 146, 1 February 2017, Pages 1–18 Cover image  

• A. Mechling, T. Arefin, H. Lee, T. Bienert, M. Reisert, S. Hamidad, E. Darcqe, A. Ehrlichd, C. Gaveriaux-Ruff, M. Parent, P. Rosa-Neto, J. Hennig, D. von Elverfeldt, B. Kieffer, and L-A Harsan
  Deletion of the mu opioid receptor gene in mice reshapes the reward–aversion connectome
  PNAS vol. 113 no. 41, 11603–11608, doi: 10.1073/pnas.1601640113

• M. Reisert, E. Kellner, B. Dhital, J. Hennig, V.G. Kiselev.
  Disentangling micro from mesostructure by diffusion MRI: A Bayesian approach.
  Neuroimage. 2016 Oct 14. pii: S1053-8119(16)30535-3. doi: 10.1016/j.neuroimage.2016.09.058.

• E. Kellner and B. Dhital and V. Kiselev and M. Reisert
  Q&A MRM Highlight, find it here

• E.-T. Hammen, J. Nakagawa, M. Reisert, H. Urbach, A. Schulze-Bonhage, K. Egger
  Tractography of hippocampal association fibers in patients with hippocampal sclerosis and temporal lobe epilepsy 
  Clinical Neurophysiology, September 2016, Volume 127, Issue 9, Pages e224–e226

• K. Egger, P. Janz, M.D. Döbrössy,  T. Bienert, M. Reisert, M. Obmann, V. Glauche, C. Haas, L.A. Harsan, H. Urbach, D. von Elverfeldt
  Microstructural effects of a neuro-modulating drug evaluated by Diffusion Tensor Imaging
  NeuroImage 12/2015; 127. DOI: 10.1016/j.neuroimage.2015.10.091

• D. Novikov, V. Kiselev and M. Reisert
  SYSTEM, METHOD AND COMPUTER-ACCESSIBLE MEDIUM FOR OBTAINING AND/OR DETERMINING MESOSCOPIC STRUCTURE AND ORIENTATION WITH FIBER TRACKING
  United States Patent Application 20160042508

• Timo Heidt, Simon Ehrismann, Jan-Bernd Hövener, Irene Neudorfer, Ingo Hilgendorf, Marco Reisert, Christoph Hagemeyer, Andreas Zirlik, Jochen Reinöhl, Christoph Bode, Karlheinz Peter, Dominik von Elverfeldt, and Constantin von zur Muhlen
  Molecular Imaging of Activated Platelets Allows the Detection of Pulmonary Embolism with Magnetic Resonance Imaging
  accepted for Nature, Scientific Reports

2015

• Mohammadi, S., Carey, D., Dick, F., Diedrichsen, J., Sereno, M. I., Reisert, M., Weiskopf, N.
  "Whole-brain in-vivo measurements of the axonal g-ratio in a group of 37 healthy volunteers"
  Frontiers in neuroscience, 9(2015)

• Christiaens, Daan and Reisert, Marco and Dhollander, Thijs and Sunaert, Stefan and Suetens, Paul and Maes, Frederik
  "Global tractography of multi-shell diffusion-weighted imaging data using a multi-tissue model"
  Neuroimage, vol 123, pp 89-101, 2015, Elsevier

• E. Kellner and B. Dhital and V. Kiselev and M. Reisert
  "Gibbs-ringing artifact removal based on local subvoxel-shifts"
  Magnetic resonance in medicine, 2015, Wiley Online Library

• H. Skibbe, M. Reisert, S. i. Maeda,  M. Koyama, S. Oba, K. Ito, S. Ishii
  "Efficient Monte Carlo Image Analysis for the Location of Vascular Entity"
  IEEE Transactions on Medical Imaging, Volume:34, Issue:2

• K. Egger , S. Yang , M. Reisert , C. Kaller , I. Mader , L. Beume , C. Weiller , H. Urbach
  "Tractography of Association Fibers Associated with Language Processing"
  Clinical Neuroradiology October 2015, Volume 25, Supplement 2, pp 231-236

• Marco Reisert
  "Probabilistic tractography, Path Integrals and the Fokker Planck equation"
  arXiv:1502.06793, 02/2015

• Christoph P Kaller, Marco Reisert, Michael Katzev, Roza Umarova, Irina Mader, Jürgen Hennig, Cornelius Weiller, Lena Köstering
  "Predicting Planning Performance from Structural Connectivity Between Left and Right Mid-Dorsolateral Prefrontal Cortex: Moderating Effects of Age During Postadolescence and Midadulthood"
  Cereb. Cortex (2015) 25 (4): 869-883. doi: 10.1093/cercor/bht276

2014

• M. Meissner, M. Reisert, T. Hugger, J. Hennig, D. von Elverfeldt and J. Leupold
  "Revealing signal from noisy 19F MR images by chemical shift artifact correction"
  Magnetic Resonance in Medicine, 2014, Wiley Online Library

• Esmeralda Ruiz, Marco Reisert
  "Shape-Based Normalized Cuts Using Spectral Relaxation for Biomedical Segmentation"
  IEEE Transactions on Image Processing

• R. Umarova, M. Reisert,  T.U. Beier, V. Kiselev, S. Kloeppel, C. Kaller, V. Glauche, I. Mader, L. Beume, J. Hennig et al
  "Attention-network specific alterations of structural connectivity in the undamaged white matter in acute neglect"
  Human brain mapping, 2014, Wiley Online Library

2013

• G. Schultz, D. Gallichan, M. Reisert, J. Hennig, and M. Zaitsev
  "MR image reconstruction from generalized projections"
  Magnetic Resonance in Medicine, 2013, Wiley Online Library

• E. Kellner, M. Mix, M. Reisert, K. Forster, T. Nguyen-Thanh, D.N. Splitthoff, P. Gall, V.G. Kiselev and I. Mader
  "Quantitative cerebral blood flow with bolus tracking perfusion MRI: Measurements in porcine model and comparison with H215O PET"
  Magnetic Resonance in Medicine, 2013, Wiley Online Library               

• Horn A, Ostwald D, Reisert M, Blankenburg F.
  "The structural-functional connectome and the default network of the human brain"
  Neuroimage. 2013 Oct 4. pii: S1053-8119(13)01005-7. doi: 10.1016/j.neuroimage.2013.09.069.       

•  Laura-Adela Harsan, Csaba Dávid, Marco Reisert, Susanne Schnell, Jürgen Hennig, Dominik von Elverfeldt, and Jochen F. Staiger
  "Mapping remodeling of thalamocortical projections in the living reeler mouse brain by diffusion tractography"
  PNAS 2013 ; published ahead of print April 22, 2013, doi:10.1073/pnas.1218330110    

• C Anastasopoulos, M Reisert, VG Kiselev, T Nguyen-Thanh, A Schulze-Bonhage, J Zentner, I Mader
  "Local and Global Fiber Tractography in Patients with Epilepsy"
  American Journal of Neuroradiology, Published online before print October 24, 2013, doi: 10.3174/ajnr.A3752

• B. Zahneisen, J.Asslaender, P.Levan, T.Hugger, M.Reisert, T.Ernst and J.Hennig
  "Quantification and Correction of Respiration Induced Dynamic Field Map Changes in fMRI using 3D single shot techniques"
  accepted, Magnetic Resonance in Medicine

• Marco Reisert, Irina Mader, Roza Umarova, Simon Maier, Ludger Tebartz van Elst and Valerij G. Kiselev
  "Fiber Density Estimation from Single Q-Shell Diffusion Imaging by Tensor Divergence"
  Neuroimage. 2013 Mar 26;77C:166-176. doi: 10.1016/j.neuroimage.2013.03.032

• Henrik Skibbe and Marco Reisert
  "Rotation Covariant Image Processing for Biomedical Applications"
  Computational and Mathematical Methods in Medicine, Volume 2013, ID 931507, dx.doi.org/10.1155/2013/931507, Special Issue on Mathematical Methods in Biomedical Imaging

• Jakob Assländer, Benjamin Zahneisen, Thimo Hugger, Marco Reisert, Hsu-Lei Lee, Pierre LeVan and Jürgen Hennig
  "Single shot whole brain imaging using spherical stack of spirals trajectories"
  Neuroimage, Volume 73, June 2013, Pages 59–70     

• Nguyen-Thanh T, Reisert M, Anastasopoulos C, Hamzei F, Reithmeier T, Vry MS, Kiselev VG, Weyerbrock A and Mader I
  "Global Tracking in Human Gliomas: A Comparison with Established Tracking Methods"
  Clin Neuroradiol. 2013 Jan 18. [Epub ahead of print]      

2012

• K.H. Fritzsche, P.Neher, I.Reicht, T.van Bruggen, C.Goch, M. Reisert, M.Nolden, S.Zelzer, H.P.Meinzer and B.Stieltjes
  "MITK Diffusion Imaging"
  Methods Inf Med. 2012;51(5):441-8. doi: 10.3414/ME11-02-0031. Epub 2012 Sep 28.          

• E. Kellner and I. Mader and M. Mix  and D. Splitthoff and M. Reisert and K. Foerster and T. Nguyen-Thanh and P.Gall and V.G. Kiselev
  "Arterial input function measurements for bolus tracking perfusion imaging in the brain."
  Magn Reson Med. 2012 May 18. doi: 10.1002/mrm.24319.   

• Marco  Reisert, Elias Kellner, Valerij Kiselev
  "About the Geometry of Asymmetric Fiber Orientation Distributions"
  IEEE Trans Med Imaging. 2012 Jun;31(6):1240-9. doi: 10.1109/TMI.2012.2187916. Epub 2012 Feb 15.  

• Henrik Skibbe and Marco Reisert and Thorsten  Schmidt and Thomas Brox and  Olaf Ronneberger and Hans Burkhardt
  "Fast Rotation Invariant 3D Feature Computation utilizing Efficient Local Neighborhood Operators"
  IEEE Trans. on PAMI 2012, 10.1109/TPAMI.2011.263  

• Lingyu Ma,  Marco Reisert, Hans Burkhardt
  "A Novel  Alpha-helices Identification Approach for Intermediate Resolution  Electron Density Maps"
  IEEE/ACM  Transactions on Computational Biology and Bioinformatics,  2012, in press         

2011

• Marco Reisert, Valerij Kiselev
  "Fiber Continuity: An Anisotropic Prior for ODF Estimation.   "
  IEEE Transactions on Medical Imaging,  2011, June 2011, Volume: 30, Issue:6, On page(s): 1274 - 1283  

• Benjamin Zahneisen, Thimo Hugger, Kuan  J. Lee, Pierre LeVan, Marco Reisert, Hsu-Lei  Lee, Jakob Assländer, Maxim Zaitsev, Jürgen  Hennig
  "Single shot  concentric shells trajectories for  ultra fast fMRI"
  Magnetic  Resonance in Medicine, Nov 2011, Epub, DOI: 10.1002/mrm.23256 

• Benjamin Zahneisen, Thimo Grotz, Kuan J. Lee, Sabine Ohlendorf, Marco Reisert,Maxim Zaitsev, Jürgen Hennig
  "Three-dimensional MR-encephalography: Fast volumetric brain imaging using rosette trajectories"
  Magnetic Resonance in Medicine, Volume 65, Issue 5, pages 1260–1268, May 2011  

• Pierre Fillard, Maxime Descoteaux, Alvina Goh, Sylvain Gouttard, Ben Jeurissen, James Malcolm, Alonso Ramirez-Manzanares, Marco Reisert, Ken Sakaie, Fatima Tensaouti, Ting Yo; Jean-François Mangin, Cyril Poupon
  "Quantitative Analysis of 10 Tractography Algorithms on a Realistic Diffusion MR Phantom"
  Neuroimage, 56(1):220-34, 2011  

2010 

• M.Reisert, I. Mader, C. Anastosoulus; M. Weigel, S. Schnell; V.Kiselev,
  "Global Fiber Reconstruction Becomes Practical"
  Neuroimage. 2011 Jan 15;54(2):955-62. doi: 10.1016/j.neuroimage.2010.09.016. Epub 2010 Sep 18.  

• Matthias Schlachter, Marco Reisert, Corinna Herz, Fabienne Schlürmann, Silke Lassmann, Martin Werner, Hans Burkhardt, Olaf Ronneberger.
  "Harmonic Filters for 3D Multi-Channel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer"
  IEEE Transactions on Medical Imaging,  Issue:99, ISSN: 0278-0062, DOI: 10.1109/TMI.2010.2049856   

2009

• Marco Reisert, Nikos Canterakis and Hans Burkhardt.
  "Invariants and Covariants in Pattern Recognition and Image Analysis"
  Pattern Recognition and Machine Vision - in Honor of Late Professor King-Sun Fu,  pages 71-85. Patrick S.P. Wang (Ed.): Series in Information Science and Technology. River Publishers, 2010

• Marco Reisert and Hans Burkhardt.
  "Spherical Tensor Calculus for Local Adaptive Filtering"
  in 'Tensors in Image Processing and Computer Vision', Tensors in Image Processing and Computer Vision, ser. Advances in Pattern Recognition, S. Aja-Fernandez, R. de Luis Garcıa, D. Tao, and X. Li, Eds. Springer, 2009,     

2008

• Marco Reisert
  "Group Integration Techniques in Pattern Analysis, A Kernel View"
  In Dorothea Wagner, editor, Ausgezeichnete Informatikdissertationen 2008. Lecture Notes in Informatics (LNI) - Dissertations, Series of the Gesellschaft für Informatik e.V. (GI)    

• Marco Reisert.
  "Group Integration Techniques in Pattern Analysis - A Kernel View"
  phd-thesis, Albert-Ludwigs-University, August 2008     

• Marco Reisert and Hans Burkhardt.
  "Complex Derivative Filters"
  in IEEE Transactions on Image Processing, volume 17, number 12, pages 2265-2274, December 2008    

• Marco Reisert and Hans Burkhardt.
  "Equivariant Holomorphic Filters for Contour Denoising and Rapid Object Detection"
  in IEEE Transactions on Image Processing, volume 17, number 2, February 2008    

2007

• Maja Temerinac and Marco Reisert and Hans Burkhardt.
  "Invariant Features for Searching in Protein Fold Databases"
  in the International Journal on Computer Mathematics (IJCM), 'Special Issue on Bioinformatics', Volume 84, Issue 5, May 2007, pages 635 - 651     

• Marco Reisert and Hans Burkhardt.
  "Learning Equivariant Functions with Matrix Valued Kernels"
  in Journal on Machine Learning Research (JMLR), 8(Mar):385-408, 2007    

2006

• Marco Reisert and Hans Burkhardt.
  "Second Order 3D Shape Features: An Exhaustive Study"
  In Computers&Graphics "Special Issue on Shape Reasoning and Understanding" vol. 30, no. 2 , April 2006,

Conference Contributions (peer reviewed) / Abstracts

2016

• Elias Kellner, Karl Egger, Valerij G Kiselev, Horst Urbach, and Marco Reisert
  "Microstructure Parameters in acute Stroke: A Bayesian approach to diffusion-weighted MRI"
  Proceedings of ISMRM 2015, Singapur

• Elias Kellner, Marco Reisert, Ori Staszewski, Bibek Dhital , Valerij G Kiselev, Karl Egger , Horst Urbach, and Irina Mader
  "Bayesian Estimation of Microstructural Parameters in Glioma Patients, and Comparison with Genetic Analysis"
  Proceedings of ISMRM 2015, Singapur

• Marco Reisert, Elias Kellner, Bibek Dhital, Juergen Hennig, Valerij G. Kiselev
  "Diffusion MRI: Disentangling Micro- from Mesostructure and Bayesian Parameter Evaluation"
  Proceedings of ISMRM 2015, Singapur
  Henrik Skibbe, Elias Kellner, Valerij G Kiselev, and Marco Reisert

• "Model-free Global Tractography"
  Proceedings of ISMRM 2015, Singapur

2015

• M. Reisert , B. Dihtal , E. Kellner , H. Skibbe , C. Kaller
  "Symmetric Wiener Processes for Probabilistic Tractography and Connectivity Estimation"
  MICCAI 2015 Volume 9349 LNCS;  pp 53-60, November 2015

• E. Kellner, B. Dhital, V. Kiselev, M. Reisert
  "Gibbs-Ringing artifact removal based on local subpixel-shifts"
  Proceedings of ISMRM 2015, Toronto

• Bibek Dhital, Elias Kellner, Marco Reisert, and Valerij G. Kiselev
  "Isotropic Diffusion Weighting Provides Insight on Diffusion Compartments in Human Brain White Matter In-vivo"
  Proceedings of ISMRM 2015, Toronto

• Marco Reisert, Katharina Göbel, and Bibek Dhital
  "Diffusion Textures: A Novel Way to Represent Brain Tissue Microstructure"
  Proceedings of the ISMRM 2015, Toronto

2014

• H. Skibbe, M.Reisert and S. Ishii        
  "Efficient Metropolis-Hasting Image Analysis for the Location Of Vascular Entity"
  GCPR 2014, to appear      

• M. Reisert, V.G. Kiselev, B. Dihtal, E. Kellner, D.S. Novikov        
  "MesoFT: Unifying Diffusion Modelling and Fiber Tracking"
  Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, Springer LNCS, Volume 8675, 2014, pp 201-208

•  M. Reisert, H. Skibbe and V.G. Kiselev
  "The Diffusion Dictionary in the Human Brain Is Short: Rotation Invariant Learning of Basis Functions"
  Computational Diffusion MRI and Brain Connectivity 2014, Springer, pages 47-55

2013

• Marco Reisert and Henrik Skibbe
  "Fiber Continuity Based Spherical Deconvolution in Spherical Harmonic Domain"
  Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013, Lecture Notes in Computer Science Volume 8151, 2013, pp 493-500        

• Esmeralda Ruiz Pujadas, Marco Reisert
  "Image segmentation using normalized cuts with multiple priors"
  accepted for presentation at the SPIE Medical Imaging 2013

• Esmeralda Ruiz, Marco Reisert, Li Bai
  "Non-Euclidean basis function based level set segmentation with statistical shape prior"
  EMBC'13, July 7, 2013

2012

• Henrik Skibbe and Marco Reisert
  "Detection of Unique Point Landmarks in HARDI Images of the Human Brain"
  accepted for presentation at the CDMRI, MICCAI 2012 workshop on computational diffusion MRI

• P.F. Neher, B. Stieltjes, M. Reisert, I. Reicht, H.P. Meinzer, K.H. Fritzsche
  "Integration eines globalen Traktographieverfahrens in das Medical Imaging Interaction Toolkit"
  Bildverarbeitung für die Medizin 2012, 177-1822012

• F.Peter, B.Stieltjes and M.Reisert and I.Reich and H-P.Meinzer and K. Fritzsche
  "MITK global tractography"
  Medical Imaging 2012: Image Processing. Edited by Haynor, David R.; Ourselin, Sébastien. Proceedings of the SPIE, Volume 8314, pp. 83144D-83144D-6 (2012).

• Marco Reisert, Henrik Skibbe and Valerij G. Kiselev
  "Tensor Divergence for Fiber Density Estimation"
  accepted for Publication on MICCAI 2012  (Matlab Code)

• Henrik Skibbe and Marco Reisert
  "Circular Fourier-HOG Features for Rotation Invariant Object Detection in Biomedical Images"
  in Proceedings of the IEEE International Symposium on Biomedical Imaging 2012 (ISBI 2012), Barcelona

2011

• Laura-Adela Harsan, Csaba David, Marco Reisert, Susanne Schnell, Jürgen Hennig, Dominik von Elverfeldt and Jochen Staiger
  [Abstract] "Imaging with diffusion tractography the living mouse brain connectome in wild type and reeler mutant animals"
  BC11 : Computational Neuroscience and Neurotechnology Bernstein Conference and Neurex Annual Meeting 2011

• Peter F. Neher, Bram Stieltjes, Marco Reisert, Ignaz Reicht, Hans-Peter Meinzer and Klaus H. Fritzsche
  "MITK Global Tractography - Application to the Corticospinal Tract."
  In Proceedings of the MICCAI 2011, Workshop: DTI Tractography for Neurosurgical Planning: A Grand Challenge, Toronto, Canada

• Henrik Skibbe and Marco Reisert
  "Dense Rotation Invariant Brain Pyramids for Automated Human Brain Parcellation."
  In Proceedings of the Informatik 2011, Workshop on Emerging technologies for medical diagnosis and therapy, Berlin

• Marco Reisert and Valerij G. Kiselev
  "Diffusion Propagator Imaging by Model-driven Regularization."
  In Proceedings of the Informatik 2011, Workshop on Emerging technologies for medical diagnosis and therapy, Berlin

• Henrik Skibbe, Marco Reisert and Hans Burkhardt
  "SHOG - Spherical HOG Descriptors for Rotation Invariant 3D Object Detection."
  In Proceedings of the 33rd international conference on Pattern recognition (DAGM'11), Rudolf Mester and Michael Felsberg (Eds.). Springer-Verlag, Berlin, Heidelberg, 326-335.

• Marco Reisert and Henrik Skibbe.
  "Steerable deconvolution feature detection as an inverse problem."
  In Proceedings of the 33rd international conference on Pattern recognition (DAGM'11), Rudolf Mester and Michael Felsberg (Eds.). Springer-Verlag, Berlin, Heidelberg, 326-335.

• Henrik Skibbe, Marco Reisert, Hans Burkhardt
  "Gaussian Neighborhood Descriptors for Brain Segmentation"
  accepted, The 12th IAPR Conference on Machine Vision Applications

• Lingyu Ma, Marco Reisert, Christophe Wirth, Carola Hunte, Olaf Ronneberger, Hans Burkhardt
  "Alpha Helix Prediction based on Metropolis Hastings Sampling"
  accepted, 2011 IEEE International Symposium on Biomedical Imaging, Chicago    

•  Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
  "Spherical Bessel Filter for 3D Object Detection"
  accepted, 2011 IEEE International Symposium on Biomedical Imaging, Chicago    

• Marco Reisert, Valerij Kiselev
  [Abstract] "Fiber Continuity: An Anisotropic Prior for ODF Estimation"
  Nr 3589, Proceedings of the 18th Annual Meeting ISMRM 2011, Montreal/Canada    

• M. Reisert, M. Weigel, E. Eyal, D. Grobgeld, H. Degani, and J. Hennig
  [Abstract] "Diffusion Tensor based Reconstruction of the Ductal Tree"
  Nr 3649, Proceedings of the 18th Annual Meeting ISMRM 2011, Montreal/Canada    

2010

• L. Mavridis, V.Venkatraman, D.W. Ritchie, N.Morikawa, R.Andonov, A.Cornu, N.Malod-Dognin, J.Nicolas, M.Temerinac-Ott, M.Reisert, H.Burkhardt, A.Axenopoulos, and P.Daras,
  "SHREC'10 Track: Protein Model Classification"
  Eurographics Workshop on 3D Object Retrieval, May 2, 2010, Norrkoeping, Sweden

• Henrik Skibbe, Marco Reisert, Thorsten Schmidt, K. Palme, Olaf Ronneberger, Hans Burkhardt
  "3D Object Detection using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation"
  in Proceedings of the DAGM 2010 LNCS Darmstadt, Germany

• Marco Reisert, Irina Mader, Constantin Anastasopoulus, Susanne Schnell, Valerij Kiselev
  [Abstract] "Global Fiber Tracking becomes Practical"
  Nr.1674, Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

• Marco Reisert, Jürgen Hennig, Thimo Grotz, Benjamin Zahneisen
  [Abstract] "Efficient Off-resonance Corrected Reconstruction of Rosette Trajectories by Deformed Interpolation Kernels"
  Nr.3105, Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

• Benjamin Zahneisen, Thimo Grotz, Kuan J. Lee, Marco Reisert, Jürgen Hennig
  [Abstract] "Optimized 3D Single Shot Trajectories by Radial Arrangement of Individual Parts (RIP)"
  Nr.79, Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

• Irinia Mader, Constantin Anastasopoulus, Valerij Kiselev, A. Schulze-Bonhage, Marco Reisert
  [Abstract] "FACT, Probability Maps and Gibbs tracking for preoperative fiber tracking in epilepsy surgery"
  Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

• T. Grotz, B. Zahneisen, M. Reisert, M. Zaitsev, and J. Hennig
  [Abstract] "Undersampled Multi Coil Image Reconstruction for fast fMRI Using Adaptive Linear Neurons"
  Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

• L-A. Harsan, C. David, M. Reisert, S. Schnell, J. Hennig, D. von Elverfeldt, and J. F. Staiger
  [Abstract] "Validation of In Vivo Mouse Brain Fiber Tracking with Correlative Axonal Tracing in Wild-Type and Reeler Animals"
  Proceedings of the 18th Annual Meeting ISMRM 2010, Stockholm/Sweden

2009

• Marco Reisert, Irina Mader, Valerij Kiselev
  "Tracking a Physical Phantom by Global Fibre Reconstruction"
  MICCAI 2009, Fiber Cup 2009, Award Winning Program

• Marco Reisert, Irina Mader, Valerij Kiselev
  "Global Reconstruction of Neuronal Fibers"
   MICCAI 2009, Workshop on Diffusion Modelling and the Fiber Cup, London 2009

• Henrik Skibbe, Marco Reisert, Qing Wang, Olaf Ronneberger, Hans Burkhardt
  "Fast Computation of 3D Spherical Fourier Harmonic Descriptors - A Complete Orthonormal Basis for a Rotational Invariant Representation of  Three-Dimensional Objects"
  IEEE International Workshop on 3-D Digital Imaging and Modeling (3DIM'09), in conjunction with the ICCV'09, Kyoto, Japan

• Marco Reisert, Hans Burkhardt
  "Harmonic Filters for Generic Feature Detection in 3D"
   DAGM-Symposium 2009: pages 131-140

• Alexander Schneider, Juergen Sturm, Cyrill Stachniss, Marco Reisert, Hans Burkhardt, and Wolfram Burgard
  "Object Identification with Tactile Sensors Using Bag-of-Features"
  In Proc. of the IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), 2009    

• Janis Fehr, Marco Reisert, Hans Burkhardt
  "Cross-Correlation and Rotation Estimation of Local 3D Vector Field Patches"
  ISVC (1) 2009: pages 287-296.

• Henrik Skibbe, Marco Reisert, Olaf Ronneberger, Hans Burkhardt
  "Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics"
  DAGM-Symposium 2009: pages 141-150.

2008

• J. Fehr, M. Reisert and H. Burkhardt
  "Fast and Accurate Rotation Estimation on the 2-Sphere without Correspondences"
  ECCV (2) 2008: pages 239-251.

• M. Reisert and H. Burkhardt
  "Efficient Tensor Voting with 3D Tensorial Harmonics"
   CVPR Workshop on Tensors, 2008, Anchorage, Alaska

• J. Fehr, O. Ronneberger, J. Schulz, T. Schmidt, M. Reisert and H. Burkhardt
  "Invariance via Group-Integration: A Feature Framework for 3D Biomedical Image Analysis"
  Proceedings of Computer Graphics and Imaging (CGIM), 2008, Innsbruck, Austria

2007

• Marco Reisert, Olaf Ronneberger and Hans Burkhardt
  "A Fast and Reliable Coin Recognition System"
   Proceedings of the DAGM'07, Heidelberg, pages 415-424,

• Marco Reisert, Olaf Ronneberger and Hans Burkhardt
  "Holomorphic Filters for Object Detection"
   Proceedings of the DAGM'07, Heidelberg, pages 304-313,

• Maja Temerinac, Marco Reisert and Hans Burkhardt
  "SHREC'07 - Protein Retrieval Challenge
  Proceedings of Shape Modelling International 2007 Lyon, France

• Maja Temerinac, Marco Reisert and Hans Burkhardt
  "Protein structure description by invariant features for classification and retrieval in large data bases
  Image Analysis and in Vivo Pharmachology (IAVP) Roskilde, Denmark

2006

• Marco Reisert, Olaf Ronneberger and Hans Burkhardt
  "An Efficient Gradient Based Registration Technique for Coin Recognition"
  Competetion winning program!
  Proceedings of the Muscle CIS Coin Competition Workshop, Sep.11, 2006, Berlin, Germany, pages 19-31

• Marco Reisert and Hans Burkhardt
  "Irreducible Group Representation for 3D Shape Description"
  Proceedings of the DAGM'06, Berlin, Germany, pages 132-142

• Marco Reisert and Hans Burkhardt
  "Feature Selection for Retrieval Purposes"
  Proceedings of the ICIAR'06, Pavoa do Varzim, Portugal, Vol.1, pages 661-672

• Marco Reisert and Hans Burkhardt.
  "Invariant Features for 3D-Data based on Group Integration using Directional Information and Spherical Harmonic Expansion"
  Proceedings of the ICPR'06, Hong Kong, pages   -

2005

• Marco Reisert and Hans Burkhardt.
  "Averaging Similarity Weighted Group Representations for Pose Estimation"
  In Proceedings of Image and Vision Computing New Zealand 2005, IVCNZ'05, pages 438-443

2004

• H.Burkhardt and M.Reisert and H.Li.
  "Invariants for Discrete Structures - An Extension of Haar Integrals over Transformation Groups of Dirac Delta Functions", 
  In C.E.Rasmussen and H. Bülthoff and M.A.Giese and B.Schölkopf, editors   Proceedings of the 26th DAGM Symposium, Tübingen, Germany, Aug./Sep. 2004.   

Technical Reports

• M Reisert, H Skibbe
  "Left-Invariant Diffusion on the Motion Group in terms of the Irreducible Representations of SO(3)"
  Arxiv preprint 2012 arXiv:1202.5414

• Marco Reisert.
  "Harmonic Filters in 3D - Theory and Applications"
  Albert-Ludwigs-Universität Freiburg, Internal Report 1, February 2009

• Marco Reisert.
  "Efficient Tensor Voting with 3D Tensorial Harmonics"
  Albert-Ludwigs-Universität Freiburg, Internal Report 2, February 2008

• Marco Reisert.
  "Rotation Invariant Object Detection with Matrix-Valued Kernels"
  Albert-Ludwigs-Universität Freiburg, Internal Report 1, January 2008 

• Marco Reisert.
  "Spherical Derivatives for Steerable Filtering in 3D"
  Albert-Ludwigs-Universität Freiburg, Internal Report 3, November 2007

• Marco Reisert.
  "Equivariant Holomorphic Filters - Theory and Applications"
  Albert-Ludwigs-Universität Freiburg, Internal Report 2, April 2007  

• Marco Reisert.
  "Learning Equivariant Functions with Matrix Valued Kernels - Theory and Applications"
  Albert-Ludwigs-Universität Freiburg, Internal Report 1, June 2006

• Marco Reisert.
  "The Connection of Shape Distributions and Haar Integrals"
  Albert-Ludwigs-Universität Freiburg, Internal Report 3, April 2005

• Marco Reisert.
  "A New Technique For Matching in Large Databases"
  Albert-Ludwigs-Universität Freiburg, Internal Report 1, March 2005

• Marco Reisert, Diploma Thesis
  "Invariante Merkmalsextraktion für Drahgittermodelle", Albert-Ludwigs-Universiät Freiburg, Feb 2004,